DNA unzipping and the unbinding of directed polymers in a random media

Abstract

We consider the unbinding of a directed polymer in a random media from a wall in $d=1+1$ dimensions and a simple one-dimensional model for DNA unzipping. Using the replica trick we show that the restricted partition functions of these problems are {\em identical} up to an overall normalization factor. Our finding gives an example of a generalization of the stochastic matrix form decomposition to disordered systems; a method which effectively allows to reduce dimensionality of the problem. The equivalence between the two problems, for example, allows us to derive the probability distribution for finding the directed polymer a distance $z$ from the wall. We discuss implications of these results for the related Kardar-Parisi-Zhang equation and the asymmetric exclusion process.

5 pages, 2 figures, minor modifications, added discussion on stochastic matrix form decomposition