Publications (22)
Natural coordinate descent algorithm for L1-penalised regression in generalised linear models
Tom Michoel
Learning differential module networks across multiple experimental conditions
Pau Erola, Eric Bonnet, Tom Michoel
Context-specific transcriptional regulatory network inference from global gene expression maps using double two-way t-tests
Jianlong Qi, Tom Michoel
Reverse-engineering transcriptional modules from gene expression data
Tom Michoel, Riet De Smet, Anagha Joshi +2
Efficient and accurate causal inference with hidden confounders from genome-transcriptome variation data
Lingfei Wang, Tom Michoel
Multi-species network inference improves gene regulatory network reconstruction for early embryonic development in Drosophila
Anagha Joshi, Yvonne Beck, Tom Michoel
The large-spin asymptotics of the ferromagnetic XXZ chain
Tom Michoel, Bruno Nachtergaele
kruX: Matrix-based non-parametric eQTL discovery
Jianlong Qi, Hassan Foroughi Asl, Johan Bjorkegren +1
Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks
Tom Michoel, Riet De Smet, Anagha Joshi +2
Alignment and integration of complex networks by hypergraph-based spectral clustering
Tom Michoel, Bruno Nachtergaele
A helicoidal transfer matrix model for inhomogeneous DNA melting
Tom Michoel, Yves Van de Peer
Integrative multi-omics module network inference with Lemon-Tree
Eric Bonnet, Laurence Calzone, Tom Michoel
Central limit theorems for the large-spin asymptotics of quantum spins
Tom Michoel, Bruno Nachtergaele
Graph-based data integration predicts long-range regulatory interactions across the human genome
Sofie Demeyer, Tom Michoel
Analysis of a Gibbs sampler method for model based clustering of gene expression data
Anagha Joshi, Yves Van de Peer, Tom Michoel
Enrichment and aggregation of topological motifs are independent organizational principles of integrated interaction networks
Tom Michoel, Anagha Joshi, Bruno Nachtergaele +1
Module networks revisited: computational assessment and prioritization of model predictions
Anagha Joshi, Riet De Smet, Kathleen Marchal +2
Validating module network learning algorithms using simulated data
Tom Michoel, Steven Maere, Eric Bonnet +8
Controlling false discoveries in Bayesian gene networks with lasso regression p-values
Lingfei Wang, Tom Michoel
Implementing Quantum Gates using the Ferromagnetic Spin-J XXZ Chain with Kink Boundary Conditions
Tom Michoel, Jaideep Mulherkar, Bruno Nachtergaele
Transport of interface states in the Heisenberg chain
Tom Michoel, Bruno Nachtergaele, Wolfgang Spitzer
Detection of regulator genes and eQTLs in gene networks
Lingfei Wang, Tom Michoel