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papers

Publications (57)

physics.soc-ph2019

A network model of immigration: Enclave formation vs. cultural integration

Yao-Li Chuang, Tom Chou, Maria R. D'Orsogna

q-bio.CB2009

A mathematical model of intercellular signaling during epithelial wound healing

Filippo Posta, Tom Chou

cond-mat.stat-mech2003

Interplay of chemotaxis and chemokinesis mechanisms in bacterial dynamics

Maria R. D'Orsogna, Marc Suchard, Tom Chou

cond-mat.mes-hall2009

Enhancement of charged macromolecule capture by nanopores in a salt gradient

Tom Chou

math-ph2009

Fluctuation Theorems for Entropy Production and Heat Dissipation in Periodically Driven Markov Chains

Benjamin Hertz Shargel, Tom Chou

cond-mat.mtrl-sci1998

Kinetics and thermodynamics across single-file pores: solute permeability and rectified osmosis

Tom Chou

cond-mat.soft2003

Chiral molecule adsorption on helical polymers

Maria R. D'Orsogna, Tom Chou

physics.soc-ph2018

Age-structured social interactions enhance radicalization

Yao-Li Chuang, Tom Chou, Maria R. D'Orsogna

astro-ph1996

Counter-rotating Accretion Disks

R. V. E. Lovelace, Tom Chou

cond-mat.soft1997

How fast can fluids squeeze through micro-pores?

Tom Chou

q-bio.QM2018

Quantifying the Sensitivity of HIV-1 Viral Entry to Receptor and Coreceptor Expression

Bhaven Mistry, Maria R. D'Orsogna, Nicholas E. Webb +2

cond-mat.soft1997

Liquid Surface Wave Band Structure Instabilities

Tom Chou

cond-mat.stat-mech2010

Reconstruction of potential energy profiles from multiple rupture time distributions

Pak-Wing Fok, Tom Chou

cond-mat.stat-mech2007

Brownian ratchets driven by asymmetric nucleation of hydrolysis waves

Amit Lakhanpal, Tom Chou

cond-mat.stat-mech2008

Exact steady-state velocity of ratchets driven by random sequential adsorption

Maria R. D'Orsogna, Tom Chou, Tibor Antal

cond-mat.soft2001

Surface-dependent Coagulation Enzymes: Flow Kinetics of Factor Xa Generation on Live Membranes

Maria P. McGee, Tom Chou

cond-mat.stat-mech2003

Steady-State Properties of a Totally Asymmetric Exclusion Process with Periodic Structure

Greg Lakatos, Tom Chou, Anatoly Kolomeisky

q-bio.BM2009

Enhancement of cargo processivity by cooperating molecular motors

Filippo Posta, Maria R. D'Orsogna, Tom Chou

q-bio.QM2017

High-resolution reconstruction of cellular traction-force distributions: the role of physically motivated constraints and compressive regularization

Joshua C. Chang, Yanli Liu, Tom Chou

q-bio.NC2016

Onset, timing, and exposure therapy of stress disorders: mechanistic insight from a mathematical model of oscillating neuroendocrine dynamics

Lae Un Kim, Maria R. D'Orsogna, Tom Chou

physics.soc-ph2018

A bistable belief dynamics model for radicalization within sectarian conflict

Yao-Li Chuang, Maria R. D'Orsogna, Tom Chou

cond-mat.stat-mech2012

First passage times in homogeneous nucleation and self-assembly

Romain Yvinec, Maria R. D'Orsogna, Tom Chou

cond-mat1995

A magnetic field diagnostic for sonoluminescence

Tom Chou, Eric G. Blackman

q-bio.SC2009

Accelerated search kinetics mediated by redox reactions of DNA repair enzymes

Pak-Wing Fok, Tom Chou

cond-mat.soft2007

Diffusion and multistage kinetics of macromolecular adsorption

Tom Chou, Maria R. D'Orsogna

q-bio.PE2014

Fixation times in differentiation and evolution in the presence of bottlenecks, deserts, and oases

Tom Chou, Yu Wang

q-bio.PE2019

A mathematical model of the effects of aging on naive T-cell population and diversity

Stephanie M. Lewkiewicz, Yao-Li Chuang, Tom Chou

physics.data-an2015

Bayesian field theoretic reconstruction of bond potential and bond mobility in single molecule force spectroscopy

Joshua C. Chang, Pak-Wing Fok, Tom Chou

q-bio.SC2007

Peeling and Sliding in Nucleosome Repositioning

Tom Chou

cond-mat.stat-mech2003

Clustered bottlenecks in mRNA translation and protein synthesis

Tom Chou, Greg Lakatos

physics.data-an2014

A path-integral approach to Bayesian inference for inverse problems using the semiclassical approximation

Joshua C Chang, Van Savage, Tom Chou

q-bio.SC2007

The stochastic entry of enveloped viruses: Fusion vs. endocytosis

Tom Chou

cond-mat.stat-mech2003

On the reconstruction of diffusions from first-exit time distributions

Guillaume Bal, Tom Chou

cond-mat.soft2003

Ribosome recycling, diffusion, and mRNA loop formation in translational regulation

Tom Chou

astro-ph1997

A Vorticity-Magnetic Field Dynamo Instability

Eric G. Blackman, Tom Chou

math.PR2016

A hierarchical kinetic theory of birth, death, and fission in age-structured interacting populations

Tom Chou, Chris D Greenman

cond-mat.stat-mech2007

Dynamic Boundaries in Asymmetric Exclusion Processes

Sarah A. Nowak, Pak-Wing Fok, Tom Chou

q-bio.PE2018

Immigration-induced phase transition in a regulated multispecies birth-death process

Song Xu, Tom Chou

cond-mat.stat-mech2000

Statistical thermodynamics of membrane bending mediated protein-protein attraction

Tom Chou, Ken S. Kim, George Oster

cond-mat.soft2001

Geometry-dependent electrostatics near contact lines

Tom Chou

q-bio.QM2018

The Effects of Statistical Multiplicity of Infection on Virus Quantification and Infectivity Assays

Bhaven Mistry, Maria R. D'Orsogna, Tom Chou

cs.CV2013

Iterative graph cuts for image segmentation with a nonlinear statistical shape prior

Joshua C. Chang, Tom Chou

cond-mat.soft1998

Kinetics of nanopore transport

Tom Chou

cond-mat.stat-mech2005

First Passage and Cooperativity of Queuing Kinetics

Maria D'Orsogna, Tom Chou

cond-mat.soft2003

Water alignment, dipolar interactions, and multiple proton occupancy during water-wire proton transport

Tom Chou

cond-mat.stat-mech1999

Entropy-driven pumping across zeolites and biological channels

Tom Chou, Detlef Lohse

q-bio.PE2019

Dynamics of T Cell Receptor Distributions Following Acute Thymic Atrophy and Resumption

Stephanie M. Lewkiewicz, Yao-Li Chuang, Tom Chou

cond-mat.stat-mech2002

An interacting spin flip model for one-dimensional proton conduction

Tom Chou

physics.flu-dyn2000

Capillary-gravity wave transport over spatially random drift

Guillaume Bal, Tom Chou

q-bio.BM2008

Charge transport-mediated recruitment of DNA repair enzymes

Pak-Wing Fok, Chin-Lin Guo, Tom Chou

cond-mat.soft2002

A length-dynamic Tonks gas theory of histone isotherms

Tom Chou

cond-mat.stat-mech2006

Hydrodynamic mean field solutions of 1D exclusion processes with spatially varying hopping rates

Greg Lakatos, John O'Brien, Tom Chou

q-bio.BM2004

Physics of RecA-mediated homologous recognition

Kevin Klapstein, Tom Chou, Robijn Bruinsma

cond-mat1997

Band Structure of Periodically Surface-Scattered Water Waves

Tom Chou

q-bio.SC2008

Mechanisms of receptor/coreceptor-mediated entry of enveloped viruses

Sarah A. Nowak, Tom Chou

cond-mat.soft2006

Kelvin-Helmholtz instabilities across periodic plates

Tom Chou

cond-mat1996

Electrostatics of Lipid Bilayer Bending

Tom Chou, Marko V. Jaric', Eric D. Siggia