Publications (29)
Vector Nonlinear Klein-Gordon Lattices: General Derivation of Small Amplitude Envelope Soliton Solutions
Simona Cocco, Maria Barbi, Michel Peyrard
Adaptation of olfactory receptor abundances for efficient coding
Tiberiu Tesileanu, Simona Cocco, Remi Monasson +1
Adaptive cluster expansion for the inverse Ising problem: convergence, algorithm and tests
Simona Cocco, Rémi Monasson
High-Dimensional Inference with the generalized Hopfield Model: Principal Component Analysis and Corrections
Simona Cocco, Remi Monasson, Vitor Sessak
Inferring DNA sequences from mechanical unzipping data: the large-bandwidth case
Valentina Baldazzi, Serena Bradde, Simona Cocco +2
Adaptive Cluster Expansion for Inferring Boltzmann Machines with Noisy Data
Simona Cocco, Rémi Monasson
Learning protein constitutive motifs from sequence data
Jérôme Tubiana, Simona Cocco, Rémi Monasson
Approximate analysis of search algorithms with "physical" methods
Simona Cocco, Remi Monasson, Andrea Montanari +1
Theoretical study of collective modes in DNA at ambient temperature
Simona Cocco, Remi Monasson
Statistical Physics and Representations in Real and Artificial Neural Networks
Simona Cocco, Rémi Monasson, Lorenzo Posani +2
Reconstructing a Random Potential from its Random Walks
Simona Cocco, Remi Monasson
Heuristic average-case analysis of the backtrack resolution of random 3-Satisfiability instances
Simona Cocco, Remi Monasson
Fast Inference of Interactions in Assemblies of Stochastic Integrate-and-Fire Neurons from Spike Recordings
Remi Monasson, Simona Cocco
Stochastic Ratchet Mechanisms for Replacement of Proteins Bound to DNA
Simona Cocco, John F. Marko, Remi Monasson
Analysis of the computational complexity of solving random satisfiability problems using branch and bound search algorithms
Simona Cocco, Remi Monasson
Helicoidal model for DNA opening
Maria Barbi, Simona Cocco, Michel Peyrard
Learning Compositional Representations of Interacting Systems with Restricted Boltzmann Machines: Comparative Study of Lattice Proteins
Jérôme Tubiana, Simona Cocco, Rémi Monasson
Trajectories in phase diagrams, growth processes and computational complexity: how search algorithms solve the 3-Satisfiability problem
Simona Cocco, Remi Monasson
Role of calcium and noise in the persistent activity of an isolated neuron
Simona Cocco
Direct-Coupling Analysis of nucleotide coevolution facilitates RNA secondary and tertiary structure prediction
Eleonora De Leonardis, Benjamin Lutz, Sebastian Ratz +4
On the trajectories and performance of Infotaxis, an information-based greedy search algorithm
Carlo Barbieri, Simona Cocco, Rémi Monasson
Analytical and Numerical Study of Internal Representations in Multilayer Neural Networks with Binary Weights
Simona Cocco, Remi Monasson, Riccardo Zecchina
Dynamical modelling of molecular constructions and setups for DNA unzipping
Carlo Barbieri, Simona Cocco, Remi Monasson +1
Protein-Mediated DNA Loops: Effects of Protein Bridge Size and Kinks
Nicolas Douarche, Simona Cocco
Benchmarking inverse statistical approaches for protein structure and design with exactly solvable models
Hugo Jacquin, Amy Gilson, Eugene Shakhnovich +2
Learning probabilities from random observables in high dimensions: the maximum entropy distribution and others
Tomoyuki Obuchi, Simona Cocco, Rémi Monasson
From principal component to direct coupling analysis of coevolution in proteins: Low-eigenvalue modes are needed for structure prediction
Simona Cocco, Remi Monasson, Martin Weigt
On the entropy of protein families
John Barton, Arup Chakraborty, Simona Cocco +2
Statistical Mechanics of Torque Induced Denaturation of DNA
Simona Cocco, Remi Monasson