papers
Publications (6)
q-bio.GN2013
SOAPdenovo-Trans: De novo transcriptome assembly with short RNA-Seq reads
Yinlong Xie, Gengxiong Wu, Jingbo Tang +13
q-bio.GN2013
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov +88
cs.DC2014
MICA: A fast short-read aligner that takes full advantage of Intel Many Integrated Core Architecture (MIC)
Sze-Hang Chan, Jeanno Cheung, Edward Wu +6
q-bio.GN2013
SOAP3-dp: Fast, Accurate and Sensitive GPU-based Short Read Aligner
Ruibang Luo, Thomas Wong, Jianqiao Zhu +12
q-bio.GN2014
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li, Chi-Man Liu, Ruibang Luo +2
q-bio.GN2014
GPU-Accelerated BWT Construction for Large Collection of Short Reads
Chi-Man Liu, Ruibang Luo, Tak-Wah Lam