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papers

Publications (16)

An estimate of the average number of recessive lethal mutations carried by humans

Ziyue Gao, Darrel Waggoner, Matthew Stephens +2

Efficient Algorithms for Multivariate Linear Mixed Models in Genome-wide Association Studies

Xiang Zhou, Matthew Stephens

varbvs: Fast Variable Selection for Large-scale Regression

Peter Carbonetto, Xiang Zhou, Matthew Stephens

Polygenic Modeling with Bayesian Sparse Linear Mixed Models

Xiang Zhou, Peter Carbonetto, Matthew Stephens

Using linear predictors to impute allele frequencies from summary or pooled genotype data

Xiaoquan Wen, Matthew Stephens

Small World MCMC with Tempering: Ergodicity and Spectral Gap

Yongtao Guan, Matthew Stephens

A statistical framework for joint eQTL analysis in multiple tissues

TimothÃ©e Flutre, Xiaoquan Wen, Jonathan Pritchard +1

Integrated analysis of variants and pathways in genome-wide association studies using polygenic models of disease

Peter Carbonetto, Matthew Stephens

A likelihood-based scoring method for peptide identification using mass spectrometry

Qunhua Li, Jimmy K. Eng, Matthew Stephens

Wavelet-based genetic association analysis of functional phenotypes arising from high-throughput sequencing assays

Heejung Shim, Matthew Stephens

Bayesian variable selection regression for genome-wide association studies and other large-scale problems

Yongtao Guan, Matthew Stephens

A nested mixture model for protein identification using mass spectrometry

Qunhua Li, Michael J. MacCoss, Matthew Stephens

Empirical Bayes estimation of normal means, accounting for uncertainty in estimated standard errors

Mengyin Lu, Matthew Stephens

Statistical inference of transmission fidelity of DNA methylation patterns over somatic cell divisions in mammals

Audrey Qiuyan Fu, Diane P. Genereux, Reinhard StÃ¶ger +2

Bayesian methods for genetic association analysis with heterogeneous subgroups: From meta-analyses to gene-environment interactions

Xiaoquan Wen, Matthew Stephens

Solving the Empirical Bayes Normal Means Problem with Correlated Noise

Lei Sun, Matthew Stephens