Publications (40)
Dissecting the Specificity of Protein-Protein Interaction in Bacterial Two-Component Signaling: Orphans and Crosstalks
Andrea Procaccini, Bryan Lunt, Hendrik Szurmant +2
Statistical mechanics of sparse generalization and model selection
Alejandro Lage-Castellanos, Andrea Pagnani, Martin Weigt
Towards finite-dimensional gelation
Kurt Broderix, Martin Weigt, Annette Zippelius
Approximation schemes for the dynamics of diluted spin models: the Ising ferromagnet on a Bethe lattice
Guilhem Semerjian, Martin Weigt
A thermodynamic model for agglomeration of DNA-looping proteins
Sumedha, Martin Weigt
Entropy and typical properties of Nash equilibria in two-player games
Johannes Berg, Martin Weigt
Introduction to graphs
Alexander K. Hartmann, Martin Weigt
Message passing for vertex covers
Martin Weigt, Haijun Zhou
Inter-residue, inter-protein and inter-family coevolution: bridging the scales
Hendrik Szurmant, Martin Weigt
Direct-coupling analysis of residue co-evolution captures native contacts across many protein families
Faruck Morcos, Andrea Pagnani, Bryan Lunt +7
Finitely coordinated models for low-temperature phases of amorphous systems
Reimer Kuehn, Jort van Mourik, Martin Weigt +1
Context-Aware Prediction of Pathogenicity of Missense Mutations Involved in Human Disease
Christoph Feinauer, Martin Weigt
A variational description of the ground state structure in random satisfiability problems
Giulio Biroli, Remi Monasson, Martin Weigt
Propagation of external regulation and asynchronous dynamics in random Boolean networks
Hamed Mahmoudi, Andrea Pagnani, Martin Weigt +1
Dynamics of heuristic optimization algorithms on random graphs
Martin Weigt
Cavity Approach to the Random Solid State
Xiaoming Mao, Paul M. Goldbart, Marc Mezard +1
Classification and sparse-signature extraction from gene-expression data
Andrea Pagnani, Francesca Tria, Martin Weigt
A hard-sphere model on generalized Bethe lattices: Statics
Hendrik Hansen-Goos, Martin Weigt
Threshold values, stability analysis and high-q asymptotics for the coloring problem on random graphs
Florent Krzakala, Andrea Pagnani, Martin Weigt
Computational complexity arising from degree correlations in networks
Alexei Vazquez, Martin Weigt
A hard-sphere model on generalised Bethe lattices: Dynamics
Hendrik Hansen-Goos, Martin Weigt
Direct-Coupling Analysis of nucleotide coevolution facilitates RNA secondary and tertiary structure prediction
Eleonora De Leonardis, Benjamin Lutz, Sebastian Ratz +4
Statistical mechanics perspective on the phase transition in vertex covering finite-connectivity random graphs
Alexander K. Hartmann, Martin Weigt
Improving landscape inference by integrating heterogeneous data in the inverse Ising problem
Pierre Barrat-Charlaix, Matteo Figliuzzi, Martin Weigt
Perturbation Biology: inferring signaling networks in cellular systems
Evan J. Molinelli, Anil Korkut, Weiqing Wang +13
Simultaneous identification of specifically interacting paralogs and inter-protein contacts by Direct-Coupling Analysis
Thomas Gueudré, Carlo Baldassi, Marco Zamparo +2
Fast and accurate multivariate Gaussian modeling of protein families: Predicting residue contacts and protein-interaction partners
Carlo Baldassi, Marco Zamparo, Christoph Feinauer +4
Minimal vertex covers on finite-connectivity random graphs - a hard-sphere lattice-gas picture
Martin Weigt, Alexander K. Hartmann
Coevolutionary landscape inference and the context-dependence of mutations in beta-lactamase TEM-1
Matteo Figliuzzi, Hervé Jacquier, Alexander Schug +2
Statistical mechanics of the vertex-cover problem
Alexander K. Hartmann, Martin Weigt
Sudden emergence of q-regular subgraphs in random graphs
Marco Pretti, Martin Weigt
Typical solution time for a vertex-covering algorithm on finite-connectivity random graphs
Martin Weigt, Alexander K. Hartmann
Inter-protein sequence co-evolution predicts known physical interactions in bacterial ribosomes and the trp operon
Christoph Feinauer, Hendrik Szurmant, Martin Weigt +1
From principal component to direct coupling analysis of coevolution in proteins: Low-eigenvalue modes are needed for structure prediction
Simona Cocco, Remi Monasson, Martin Weigt
The number of guards needed by a museum: A phase transition in vertex covering of random graphs
Martin Weigt, Alexander K. Hartmann
Solving satisfiability problems by fluctuations: The dynamics of stochastic local search algorithms
Wolfgang Barthel, Alexander K. Hartmann, Martin Weigt
Statistical mechanics of combinatorial auctions
Tobias Galla, Michele Leone, Matteo Marsili +3
Clustering by soft-constraint affinity propagation: Applications to gene-expression data
Michele Leone, Sumedha, Martin Weigt
Improved contact prediction in proteins: Using pseudolikelihoods to infer Potts models
Magnus Ekeberg, Cecilia Lövkvist, Yueheng Lan +2
Unsupervised and semi-supervised clustering by message passing: Soft-constraint affinity propagation
Michele Leone, Sumedha, Martin Weigt