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papers

Publications (75)

cond-mat.stat-mech2008

Nonequilibrium phase transition in the sedimentation of reproducing particles

C. Barrett-Freeman, M. R. Evans, D. Marenduzzo +1

cond-mat.soft2006

Stall, spiculate or runaway - the fate of fibers growing towards fluctuating membranes

D. R. Daniels, D. Marenduzzo, M. S. Turner

cond-mat.soft2012

Confined Cubic Blue Phases under Shear

O. Henrich, K. Stratford, D. Marenduzzo +2

cond-mat.soft2017

Flow of deformable droplets: discontinuous shear thinning and velocity oscillations

M. Foglino, A. N. Morozov, O. Henrich +1

physics.bio-ph2012

Cytoplasmic streaming in plant cells: the role of wall slip

K. Wolff, D. Marenduzzo, M. E. Cates

cond-mat.soft2011

Bistable defect structures in blue phase devices

A. Tiribocchi, G. Gonnella, D. Marenduzzo +2

cond-mat.soft2011

Switching dynamics in cholesteric blue phases

A. Tiribocchi, G. Gonnella, D. Marenduzzo +1

cond-mat.soft2010

Lattice Boltzmann simulations of liquid crystalline fluids: active gels and blue phases

M. E. Cates, O. Henrich, D. Marenduzzo +1

q-bio.PE2010

Arrested phase separation in reproducing bacteria: a generic route to pattern formation?

M. E. Cates, D. Marenduzzo, I. Pagonabarraga +1

cond-mat.soft2013

Colloidal templating at a cholesteric - oil interface: Assembly guided by an array of disclination lines

J. S. Lintuvuori, A. C. Pawsey, K. Stratford +3

physics.bio-ph2002

Geometry of compact tubes and protein structures

J. R. Banavar, A. Flammini, D. Marenduzzo +2

cond-mat.soft2005

Switching hydrodynamics in multi-domain, twisted nematic, liquid crystal devices

D. Marenduzzo, E. Orlandini, J. M. Yeomans

cond-mat.soft2012

Rheology of Lamellar Liquid Crystals in Two and Three Dimensions: A Simulation Study

O. Henrich, K. Stratford, D. Marenduzzo +2

cond-mat.soft2006

Rheology of cholesteric blue phases

A. Dupuis, D. Marenduzzo, E. Orlandini +1

physics.bio-ph2013

Intracellular facilitated diffusion: searchers, crowders and blockers

C. A. Brackley, M. E. Cates, D. Marenduzzo

cond-mat.soft2006

Polymer packaging and ejection in viral capsids: shape matters

I. Ali, D. Marenduzzo, J. M. Yeomans

cond-mat.soft2012

Facilitated diffusion on confined DNA

G. Foffano, D. Marenduzzo, E. Orlandini

cond-mat.soft2018

Mixtures of blue phase liquid crystal with simple liquids: elastic emulsions and cubic fluid cylinders

J. S. Lintuvuori, K. Stratford, M. E. Cates +1

cond-mat.soft2003

Rheology of distorted nematic liquid crystals

D. Marenduzzo, E. Orlandini, J. M. Yeomans

cond-mat.soft2008

Melting a stretched DNA

D. Marenduzzo, A. Maritan, E. Orlandini +2

cond-mat.soft2007

Lattice Boltzmann simulations of spontaneous flow in active liquid crystals: the role of boundary conditions

D. Marenduzzo, E. Orlandini, M. E. Cates +1

cond-mat.soft2014

Filling an emulsion drop with motile bacteria

I. D. Vladescu, E. J. Marsden, J. Schwarz-Linek +6

cond-mat.soft2014

Threading Dynamics of Ring Polymers in a Gel

D. Michieletto, D. Marenduzzo, E. Orlandini +2

cond-mat.stat-mech2012

Pattern formation in self-propelled particles with density-dependent motility

F. D. C. Farrell, J. Tailleur, D. Marenduzzo +1

cond-mat.soft2011

On the structure of blue phase III

O. Henrich, K. Stratford, M. E. Cates +1

cond-mat.stat-mech2003

Elasticity of semiflexible polymers with and without self-interactions

A. Rosa, T. X. Hoang, D. Marenduzzo +1

cond-mat.stat-mech2003

Mechanical unfolding of directed polymers in a poor solvent: novel critical exponents

A. Rosa, D. Marenduzzo, A. Maritan +1

cond-mat.soft2012

Phase separation and rotor self-assembly in active particle suspensions

J. Schwarz-Linek, C. Valeriani, A. Cacciuto +4

cond-mat.soft2010

Ordering dynamics of blue phases entails kinetic stabilization of amorphous networks

O. Henrich, K. Stratford, D. Marenduzzo +1

cond-mat.soft2005

Knotting of random ring polymers in confined spaces

C. Micheletti, D. Marenduzzo, E. Orlandini +1

cond-mat.stat-mech2001

Phase diagram of force-induced DNA unzipping in exactly solvable models

D. Marenduzzo, A. Trovato, A. Maritan

cond-mat.soft2012

Colloids in active fluids: Anomalous micro-rheology and negative drag

G. Foffano, J. S. Lintuvuori, K. Stratford +2

physics.bio-ph2014

Models for twistable elastic polymers in Brownian dynamics, and their implementation for LAMMPS

C. A. Brackley, A. N. Morozov, D. Marenduzzo

cond-mat.soft2013

Flexoelectric switching in cholesteric blue phases

A. Tiribocchi, M. E. Cates, G. Gonnella +2

cond-mat.soft2011

Switching and defect dynamics in multistable liquid crystal devices

A. Tiribocchi, G. Gonnella, D. Marenduzzo +1

cond-mat.stat-mech2005

Continuum model for polymers with finite thickness

D. Marenduzzo, C. Micheletti, H. Seyed-allaei +2

cond-mat.soft2015

A minimal physical model captures the shapes of crawling cells

E. Tjhung, A. Tiribocchi, D. Marenduzzo +1

cond-mat.soft2010

Thermodynamics of Blue Phases In Electric Fields

O. Henrich, D. Marenduzzo, K. Stratford +1

cond-mat.soft2016

Light-induced self-assembly of active rectification devices

J. Stenhammar, R. Wittkowski, D. Marenduzzo +1

physics.bio-ph2013

Mechanically driven growth of quasi-two dimensional microbial colonies

F. D. C. Farrell, O. Hallatschek, D. Marenduzzo +1

cond-mat.soft2016

Shear dynamics of an inverted nematic emulsion

A. Tiribocchi, M. Da Re, D. Marenduzzo +1

cond-mat.soft2015

Self-assembly of colloid-cholesteric composites provides a possible route to switchable optical materials

K. Stratford, O. Henrich, J. S. Lintuvuori +2

cond-mat.soft2005

Physics of thick polymers

D. Marenduzzo, A. Flammini, A. Trovato +2

cond-mat.soft2017

Entropic elasticity and dynamics of the bacterial chromosome: a simulation study

M. C. F. Pereira, C. A. Brackley, J. S. Lintuvuori +2

cond-mat.stat-mech2003

Lattice Boltzmann Algorithm for three-dimensional liquid crystal hydrodynamics

C. Denniston, D. Marenduzzo, E. Orlandini +1

physics.bio-ph2016

A 1-dimensional statistical mechanics model for nucleosome positioning on genomic DNA

S. Tesoro, I. Ali, A. N. Morozov +2

cond-mat.soft2015

Field-controlled columnar and planar patterning of cholesteric colloids

Giuseppe D'Adamo, D. Marenduzzo, C. Micheletti +1

cond-mat.soft2011

Colloids in liquid crystals: a lattice Boltzmann study

J. S. Lintuvuori, D. Marenduzzo, K. Stratford +1

cond-mat.soft2009

Domain growth in cholesteric blue phases: hybrid lattice Boltzmann simulations

O. Henrich, D. Marenduzzo, K. Stratford +1

cond-mat.soft2012

Spontaneous symmetry breaking in active droplets provides a generic route to motility

E. Tjhung, D. Marenduzzo, M. E. Cates

cond-mat.soft2005

Numerical calculations of the phase diagram of cubic blue phases in cholesteric liquid crystals

A. Dupuis, D. Marenduzzo, J. M. Yeomans

cond-mat.soft2013

Spiral and never-settling patterns in active suspensions

X. Yang, D. Marenduzzo, M. C. Marchetti

cond-mat.soft2010

Non-equilibrium dynamics of an active colloidal "chucker"

C. Valeriani, R. J. Allen, D. Marenduzzo

cond-mat.soft2012

Self-Assembly and Nonlinear Dynamics of Dimeric Colloidal Rotors in Cholesterics

J. S. Lintuvuori, K. Stratford, M. E. Cates +1

cond-mat.stat-mech2010

The role of noise and advection in absorbing state phase transitions

C. Barrett-Freeman, M. R. Evans, D. Marenduzzo +1

cond-mat.soft2004

Permeative flows in cholesteric liquid crystals

D. Marenduzzo, E. Orlandini, J. M. Yeomans

cond-mat.soft2007

Steady-state hydrodynamic instabilities of active liquid crystals: Hybrid lattice Boltzmann simulations

D. Marenduzzo, E. Orlandini, M. E. Cates +1

cond-mat.soft2005

On the form of growing strings

D. Marenduzzo, T. X. Hoang, F. Seno +2

cond-mat.stat-mech2002

Stretching of a polymer below the Theta point

D. Marenduzzo, A. Maritan, A. Rosa +1

physics.bio-ph2018

A stochastic model of supercoiling-dependent transcription

C. A. Brackley, J. Johnson, A. Bentivoglio +4

cond-mat.soft2006

Depletion effects and loop formation in self-avoiding polymers

N. M. Toan, D. Marenduzzo, P. R. Cook +1

q-bio.BM2015

Binding of bivalent transcription factors to active and inactive regions folds human chromosomes into loops, rosettes and domains

C. A. Brackley, J. Johnson, S. Kelly +2

cond-mat.soft2001

Dynamical scaling of the DNA unzipping transition

D. Marenduzzo, S. M. Bhattacharjee, A. Maritan +2

physics.bio-ph2016

Ephemeral protein binding to DNA shapes stable nuclear bodies and chromatin domains

C. A. Brackley, B. Liebchen, D. Michieletto +3

cond-mat.soft2018

Active interface growth and pattern formation in membrane-protein systems

F. Cagnetta, M. R. Evans, D. Marenduzzo

cond-mat.stat-mech2002

Force-induced unfolding of a homopolymer on fractal lattice: exact results vs. mean field predictions

D. Marenduzzo, A. Maritan, F. Seno

cond-mat.soft2011

Colloids in Cholesterics: Size-Dependent Defects and Non-Stokesian Microrheology

J. S. Lintuvuori, K. Stratford, M. E. Cates +1

cond-mat.soft2008

Shearing active gels close to the isotropic-nematic transition

M. E. Cates, S. M. Fielding, D. Marenduzzo +2

cond-mat.soft2010

Nonlinear dynamics and rheology of active fluids: simulations in two dimensions

S. M. Fielding, D. Marenduzzo, M. E. Cates

cond-mat.stat-mech2002

DNA sequence from the unzipping force? : one mutation problem

Somendra M. Bhattacharjee, D. Marenduzzo

cond-mat.soft2012

Bulk rheology and microrheology of active fluids

G. Foffano, J. S. Lintuvuori, A. N. Morozov +3

physics.bio-ph2016

Non-equilibrium chromosome looping via molecular slip-links

C. A. Brackley, J. Johnson, D. Michieletto +4

physics.bio-ph2012

Facilitated diffusion on mobile DNA: configurational traps and sequence heterogeneity

C. A. Brackley, M. E. Cates, D. Marenduzzo

cond-mat.soft2017

Dynamical Scaling and Phase Coexistence in Topologically-Constrained DNA Melting

Y. A. G. Fosado, D. Michieletto, D. Marenduzzo

cond-mat.soft2018

Rheology and microrheology of deformable droplet suspensions

M. Foglino, A. N. Morozov, D. Marenduzzo